Release notes

current version
CViSB version 1.0.0
Note: only major versions with big changes are shown. In between releases, there may be minor changes, particularly to sample metadata.
CViSB version 1.0.0
published 18 November 2020

November 2020 data release

Download

  • Added /download page, to filter experimental records and download the raw data along with associated patient metadata

Data

  • Wiped existing patient index, due to changes in infectionDate Elasticsearch mapping
  • Updated sarscov2-virus-seq dataset, datadownloads, experiments, patients
  • Updated KGH acute and survivor patient data; added COVID-19 cohort
  • Updated ebola-virus-seq dataset, datadownloads, patients, experiments
  • Re-added lassa-virus-seq patients (no changes)
  • Created systems-serology-32783920 dataset, datadownload, experiments, patients (SARS-CoV-2 Systems Serology data from Seattle)
  • Created rtcpr-32783920 dataset (RT-PCR data associated with SARS-CoV-2 Systems Serology data from Seattle)
  • Added blood-counts-vhf dataset, datadownload, experiments (blood count data from Lassa/Ebola patients at KGH)
  • Added blood-chemistry-vhf dataset, datadownload, experiments (Piccolo blood chemistry data from Lassa/Ebola patients at KGH)
  • Added rtpcr-vhf dataset, datadownload, experiments (Lassa RT-PCR data from Lassa/Ebola patients at KGH)
  • Added rapid-diagnostics-vhf dataset, datadownload, experiments (Lassa RDT data from Lassa/Ebola patients at KGH)
  • Added vitals-vhf dataset, datadownload, experiments (vital measurement data from Lassa/Ebola patients and survivors at KGH)

General

  • Created /upload/catalog to update DataCatalog record
CViSB version 0.2.4
published 3 November 2020

Updated SARS-CoV-2 virus sequencing data

Data

  • Updated SARS-CoV-2 virus sequencing data
CViSB version 0.2.3
published 27 August 2020

Updated LASV and EBOV sequencing datasets

Data

  • Updated Lassa and Ebola virus sequencing data.
CViSB version 0.2.2
published 25 August 2020

Added SARS-CoV2 sequencing datasets

Data

  • Initial publication of SARS-CoV2 virus sequencing data.
CViSB version 0.2.1
published 19 June 2020

Updated Ebola Viral Sequencing datasets

Data

  • Updated publication of aligned Ebola virus sequencing data, including sequences without known outcome for the patient.
CViSB version 0.2.0
published 15 November 2019

Added Systems Serology, Ebola Viral Sequencing datasets; re-design of individual patient pages; added of preliminary, private, and embargoed tags to data and schema; added sources/citations throughout the site

Data

  • Initial publication of Systems Serology data
  • Initial publication of aligned Ebola viral sequencing data
  • Updated data and schemas with preliminary/private/embargoed tags; migrated all non-demographic data except ELISAs to `/experiment`
  • Streamlined data processing scripts for upload with error logging

Patient

  • Added source/provenance for all data
  • Added citations for all data
  • Added preliminary/private tags for data plus a warning banner for the tags
  • Reduced hardcoding of experimental data

Dataset

  • Added Systems Serology page
  • Added Ebola viral seqencing page
  • Added summary box for dataset contents
  • Added source/citation sections

Sample

  • Added gender to download

General

  • Switch header when authorized or public view
  • Added all experimental data citations to `/citation`
  • Updated/expanded experimental icons
  • Standardized styling of cohorts/outcomes

Performance

  • Upgraded to Angular 8 and associated packaged
  • Generalized fetchAll function

Bugs

  • Fixed schema validation of Experiment:data
  • Allow for arrays of enumerated values in jsonschema validation
  • Fixed Angular SSR `flatMap error
CViSB version 0.1.0
published 15 September 2019

Data

  • Initial publication of HLA data
  • Initial publication of aligned Lassa viral sequencing data
  • Added Lassa acute patient and clinical data
  • Added Ebola survivor patient and clinical data
  • Added Lassa survivor patient IDs

Sample

  • Added samples from June/July 2018 trip to Kenema Government Hospital in Sierra Leone
  • Added samples from January 2019 trip to Kenema Government Hospital in Sierra Leone