Citing the CViSB Data Portal

To reference data from the Center for Viral Systems Biology Data Portal, please cite the Center for Viral Systems Biology:

The Center for Viral Systems Biology, 2021, "Center for Viral Systems Biology data", https://data.cvisb.org/, V1.0.0.

Citing individual data sources

The data in the CViSB Data Portal is a mixture of data collected by our consortium, data contributed by our partners, and publicly available data on Lassa and Ebola. Some of the data has been published and others are works in progress. Individual data sources can be cited as:

Patient demographic & clinical data

Viral Hemorrhagic Fever Consortium / Kenema Government Hospital, 2021, https://data.cvisb.org/patient. (unpublished)

HLA sequencing data

Systems Serology data

Systems Serology data

Caroline Atyeo et al.Immunity2020, 53, 3, 524-532.e4.

rapid diagnostics data

Viral Hemorrhagic Fever Consortium / Kenema Government Hospital, 2021, https://data.cvisb.org/dataset/rapid-diagnostics-vhf. (unpublished)

vitals data

Viral Hemorrhagic Fever Consortium / Kenema Government Hospital, 2021, https://data.cvisb.org/dataset/vitals-vhf. (unpublished)

blood chemistry data

Viral Hemorrhagic Fever Consortium / Kenema Government Hospital, 2021, https://data.cvisb.org/dataset/blood-chemistry-vhf. (unpublished)

RT-PCR data

Viral Hemorrhagic Fever Consortium / Kenema Government Hospital, 2021, https://data.cvisb.org/dataset/rtpcr-vhf. (unpublished)

blood counts data

Viral Hemorrhagic Fever Consortium / Kenema Government Hospital, 2021, https://data.cvisb.org/dataset/blood-counts-vhf. (unpublished)

RT-PCR data

Caroline Atyeo et al.Immunity2020, 53, 3, 524-532.e4.

Ebola virus sequencing data

Armando Arias et al.Virus evolution2016, 2, 1, vew016.
Daniel J Park et al.Cell2015, 161, 7, 1516-26.
Miles W Carroll et al.Nature2015, 524, 7563, 97-101.
Yi-Gang Tong et al.Nature2015, 524, 7563, 93-6.
Jason T Ladner et al.Cell host & microbe2015, 18, 6, 659-69.
Joshua Quick et al.Nature2016, 530, 7589, 228-232.
Stephen K Gire et al.Science (New York, N.Y.)2014, 345, 6202, 1369-72.
Etienne Simon-Loriere et al.Nature2015, 524, 7563, 102-4.
Placide Mbala-Kingebeni et al.The Lancet. Infectious diseases2019, 19, 6, 648-657.
Tao Li et al.JCI insight2017, 2, 15, e88333.
Tao Jiang et al.The Journal of infectious diseases2017, 215, 7, 1107-1110.
Saskia L Smits et al.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin2015, 20, 40, 10.2807/1560-7917.ES.2015.20.40.30035.
Jeffrey R Kugelman et al.Emerging infectious diseases2015, 21, 7, 1135-43.
Serena A Carroll et al.Journal of virology2013, 87, 5, 2608-16.
David J Blackley et al.Science advances2016, 2, 4, e1600378.
Placide Mbala-Kingebeni et al.The Lancet. Infectious diseases2019, 19, 6, 641-647.
Tony Li et al.Journal of clinical microbiology2019, 57, 9, e00827-19.
Onikepe A Folarin et al.The Journal of infectious diseases2016, 214, suppl 3, S102-S109.
Thomas Hoenen et al.Emerging infectious diseases2016, 22, 2, 331-4.
Kayla G Barnes et al.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America2017, 65, 8, 1400-1403.
Shannon L M Whitmer et al.The Journal of infectious diseases2016, 214, suppl 3, S333-S341.
Andrea Marzi et al.Cell reports2018, 23, 6, 1806-1816.
M B DeSilva et al.Epidemiology and infection2019, 147, e88.
Alexander L Greninger et al.Genome medicine2015, 7, 99.
Suzanne E Mate et al.The New England journal of medicine2015, 373, 25, 2448-54.
Suzanne E Mate et al.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America2018, 67, 7, 1147-1149.
Gilda Grard et al.The Journal of infectious diseases2011, 204 Suppl 3, Suppl 3, S776-84.
Sylvain Baize et al.The New England journal of medicine2014, 371, 15, 1418-25.
Gaël D Maganga et al.The New England journal of medicine2014, 371, 22, 2083-91.
Jens H Kuhn et al.Genome announcements2014, 2, 6, e01178-14.
Concetta Castilletti et al.Genome announcements2015, 3, 3, e00639-15.
Shanmuga Sozhamannan et al.Viruses2015, 7, 6, 3130-54.
César G Albariño et al.Virology2015, 484, 259-64.
Maria R Capobianchi et al.Genome announcements2015, 3, 5, e01093-15.
Olamide K Oloniniyi et al.Journal of virological methods2017, 246, 8-14.
Emily Kainne Dokubo et al.The Lancet. Infectious diseases2018, 18, 9, 1015-1024.

SARS-CoV-2 virus sequencing data

Lassa virus sequencing data