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Lassa Virus Sequencing
virus sequencingLassaLassa virusLASV

updated 23 November 2020
Virus sequencing of Lassa-infected humans and rodents from Nigeria, Sierra Leone, Liberia, Guinea, and other countries. Virus sequence data will be used to determine potential correlations between the infecting virus genome and patient survival, disease severity and development of sequelae. When multiple sequences are available for one patient, the virus has been sequenced from that patient at several points in time.

How to cite

The Center for Viral Systems Biology, 2020, "Lassa Virus Sequencing", https://data.cvisb.org/lassa-virus-seq, V0.3.

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Curated alignments

Our virus sequencing datasets combine genomic sequences generated as part of our consortium with publicly available sequences. In addition to providing the raw data, we also curate sequences and provide the alignments to the broader community for downstream analyses.

Download the alignments
Sources
percent of experiments cited in source
24%
4%
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4%
3%
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2%
Olamide K Oloniniyi et al.PLoS Negl Trop Dis2018
2%
Danny A Asogun et al.PLoS Negl Trop Dis2012
2%
Ayodeji Olayemi et al.Emerg Infect Dis2016
2%
Stephan Olschläger et al.J Clin Microbiol2010
1%
Anges Yadouleton et al.Emerg Microbes Infect2020
1%
David Safronetz et al.Emerg Infect Dis2010
1%
Hayden C Metsky et al.Nat Biotechnol2019
0%
B F Ardelli et al.Trans R Soc Trop Med Hyg2007
0%
David Safronetz et al.PLoS Negl Trop Dis2013
0%
A H Demby et al.J Clin Microbiol1994
0%
Leonce Kouadio et al.Emerg Infect Dis2015
0%
0%
S Günther et al.J Infect Dis2001
0%
Simon Vieth et al.Trans R Soc Trop Med Hyg2007
0%
0%
0%
Shannon L M Whitmer et al.Emerg Infect Dis2018
0%
Michael R Wiley et al.Lancet Infect Dis2019
0%
M Djavani et al.Virology1997
0%
S Günther et al.Emerg Infect Dis2000
0%
Emilie Lecompte et al.Emerg Infect Dis2006
0%
S Atkin et al.Euro Surveill2009
0%
J C Clegg et al.Virus Res1991
0%
0%
J C Clegg et al.Virology1985
0%
M D Bowen et al.Mol Phylogenet Evol1997